Solution : https://service.sap.com/sap/support/notes/788218 (SAP Service marketplace login required)
Summary : 
      This SAP Note addresses issues related to system upgrades, specifically targeting database-independent problems to prevent data loss, upgrade shutdowns, and extended runtimes. It includes instructions for checking the R3up and PREPARE processes before commencement. Users must revisit the note right before the upgrade due to regular updates. The information is tailored to various SAP ERP Central Component versions and other system environments like WAS and DB2, guiding through necessary preparations and highlighting required subsequent notes for a successful update. Key corrections and preventive measures are specified to ensure upgrade integrity and stability.
Key words : 
upgrades -> plug-ins -> sap solution tools -> st-pi -> st-pi 2005_1_640 -> supplementary upgrade phase bind_patch, /patches -> plug-ins -> sap solution tools -> st-pi -> st-pi 2005_1_640, /data-archiving -> media library -> literature & brochure-> data management guide------------------------< d022030 jun/21/06 >-------------------------section, source release system includes sap_hr 46c support package level d1, sap_hr 46c support package level d2, long runtimes -----------------------< d000706 28/nov/06 >--------------------------modification adjustment planning, ------------------------< d024329 14/oct/04 >-------------------------component ps-st-wbs, call r3up---------------------------------------------------------------------- ii/ important general information -----------------------< d025323, ------------------------< d024991 oct/19/06 >-------------------------data management planning - link, -----------------------< d030731 15/sep/05 >------------------------run report z_873466_repair_after_upgradetable cokey2
Related Notes : 
       
| 967821 | Incorrect definition of SRM_FILL_KC_TABLES_AFTER_IMP | 
| 900607 | Checklist: SD texts when upgrading to 4.70 and higher | 
| 893352 | Upgrade to NW04 based SAP solutions on Linux x86_64 | 
| 885955 | Language content in DDIC import not imported (Upg 640/700) | 
| 873466 | COKEY2: Program termination due to data inconsistency | 
| 865142 | Customer-specific entries in EDIFCT are deleted | 
| 849925 | Upgrade: termination in phase TABIM_UPG / SHADOW_IMPORT_UPG2 | 
| 828554 | Incorrect BW MDMP check when upgrading to Basis 6.40 | 
| 826528 | Some profile parameters not recognized. | 
| 792850 | |
| 783308 | TLIBG inconsistencies before the upgrade | 
| 781111 | RUERP04 - Beverage Solution pushbutton in standard system | 
| 778198 | SIAC_XPRA_CONVERT_FROM_4X_64, upgrade to Netweaver 04 | 
| 766379 | Error in phase DIFFEXPDDIV | 
| 747622 | Active components in the NetWeaver ABAP stack | 
| 746576 | SAP ERP Central Component 5.0: Installation/upgrade with SP1 | 
| 741280 | OS60: Updating parameter effectivities | 
| 737115 | Add. Info on upgrade to SCM41 SRM40 ECC50 MSSQL | 
| 718912 | Message DI829 during mass activation of lock objects | 
| 716378 | Missing libraries during Unicode upgrade | 
| 705485 | Error in TR_CMDIMPORT_FDTASKS and TR_CMDIMPORT_PREPARE | 
| 700779 | Upgrading SAP ECC 500/600 with PI/PI-A/SLL_PI | 
| 700778 | Add-ons integrated into SAP ECC 500 | 
| 700675 | Additional information on the upgrade to ECC 5.0 INFORMIX | 
| 674070 | Tables in the substitution container after an upgrade | 
| 673066 | LSMW: Upgrade to SAP Enterprise 4.7 (or Basis 6.20) | 
| 672651 | OCS: Known problems with Support Packages in Basis Rel.6.40 | 
| 669656 | Additional info about upgrade to SAP Web AS 6.40 MaxDB | 
| 663258 | Corrections for R3up version 640 | 
| 663240 | Repairs for upgrade to Basis 640 | 
| 662219 | Add. info. on upgrading to SAP Web AS 6.40 ORACLE | 
| 662191 | DB6: Additions to upgrade (based) on SAP Web AS 6.40 | 
| 661569 | Additional Information: Upgrade to SAP Web AS 6.40: iSeries | 
| 661252 | DB2-z/OS: Additions upgrade to Basis 6.40 | 
| 626272 | Termination in the JOB_RSTLANUPG phase | 
| 606041 | Upgrade with ST-PI 003C (Solution Tools Plug-In) | 
| 557314 | As of Release 610: TVARV replaced with TVARVC | 
| 547773 | SPAU: interface method names are truncated | 
| 539977 | Release strategy for add-on ST-PI | 
| 534826 | LIS: Current update programs after upgrade | 
| 526694 | saposcol based on AIX perfstat library | 
| 525677 | Problems when starting shadow instance | 
| 511732 | Removed code pages in 6.10 | 
| 499708 | Additional information on upgrading to Basis 620 with AIX | 
| 496963 | 32-bit source release in upgrades to 620 | 
| 485741 | Handling customer translations during the upgrade | 
| 485455 | Change in code page structure for Release >= 6.10 | 
| 430318 | Shadow instance on other operating system | 
| 401389 | Where-used list in the Workbench as of Release 6.10 | 
| 369542 | CJA1: Upgrade of Release 4.0 preliminary solution to >= 4.5 | 
| 360929 | Loss of address data on execution of RSXADR05 | 
| 197886 | Upgrade: messages in CHK_POSTUP: BDL*, STSL*, BAM*, SQLR* | 
| 185315 | SFAC:Advance inclusion of KIMSK into field select. | 
| 162980 | saposcol for 64-bit Solaris | 
| 148926 | saposcol version 32 or 64 bit on ReliantUNIX | 
| 29972 | Instance numbers in a distributed system | 
| 28022 | Customer system: Where-used list of SAP objects | 
| 19227 | Open newest saposcol |