Solution : https://service.sap.com/sap/support/notes/599700 (SAP Service marketplace login required)
Key words : 
sapcar    cd '/usr/sap/trans'    sapcar '-xvf /usr/sap/trans/sapk46bcpc, tp 'addtobuffer sapk46bcpc <sid>'    tp 'import sapk46bcpc <sid> u12689', file      /usr/sap/trans/config/<sid>/system, create collection r3<sid>shd, asp library r3<sid>data, library r3<sid>shd, r3<sid>shdsevere error, data element cpkind updates, critical core-business procedures, component bc-ins-as4
Related Notes : 
       
| 620462 | iSeries: Symbolic links MUST be correct before R3SETUP runs | 
| 500950 | iSeries: R/3 EBCDIC --> ASCII Codepage Conversion Doc. | 
| 390665 | Additional information: Upgrade to 4.6C SR 2 (DB2/400) | 
| 350033 | AS/400: Additions Upgrade to BW2.1C | 
| 326783 | Additional Info: Upgrade to 4.6C SR1 (DB2/400) | 
| 302480 | Additional Info: Upgrade to 4.6D - DB2/400 | 
| 202169 | Additional Info: Upgrade to 4.6C - DB2/400 |