Solution : https://service.sap.com/sap/support/notes/1735482 (SAP Service marketplace login required)
Key words : 
/usr/sap/<sid>/upg/java/data/archives/portal/workingdir/portal/, /usr/sap/<sid>/sum/java/data/archives/portal/workingdir/, com_tc~lm~ctc~cpa~kmc_sda archive, /tc~lm~ctc~cpa~kmc_sda] defines, error message shows, identical application aliases, ear file exists, application [sap, file exists, application alias
Related Notes : 
       
| 1707161 | Central Note - Software Update Manager 1.0 SP06 [lmt_007] | 
| 1609441 | |
| 1390477 | Additional info about the upgrade to SAP NetWeaver 7.3 |